microbiome-models 8
- Exploiting gut microbial traits and trad-offs in microbiome-based therapeutics (Nature Reviews in Bioengineering)
- Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis (The ISME Journal)
- Metabolic models of human gut microbiota - Advances and challenges (Cell Systems)
- Metabolic models predict bacterial passengers in colorectal cancer (Cancer & Metabolism)
- Towards predicting the environmental metabolome from metagenomics with a mechanistic model (Nature Microbiology)
- From cultured to uncultured genome sequences - metagenomics and modeling microbial ecosystems (Cellular and Molecular Life Sciences)
- miaSim - an R/Bioconductor package to easily simulate microbial community dynamics (Methods in Ecology and Evolution)
- Improving genome-scale metabolic models of incomplete genomes with deep learning